Package: nph 2.1

nph: Planning and Analysing Survival Studies under Non-Proportional Hazards

Piecewise constant hazard functions are used to flexibly model survival distributions with non-proportional hazards and to simulate data from the specified distributions. A function to calculate weighted log-rank tests for the comparison of two hazard functions is included. Also, a function to calculate a test using the maximum of a set of test statistics from weighted log-rank tests (MaxCombo test) is provided. This test utilizes the asymptotic multivariate normal joint distribution of the separate test statistics. The correlation is estimated from the data. These methods are described in Ristl et al. (2021) <doi:10.1002/pst.2062>. Finally, a function is provided for the estimation and inferential statistics of various parameters that quantify the difference between two survival curves. Eligible parameters are differences in survival probabilities, log survival probabilities, complementary log log (cloglog) transformed survival probabilities, quantiles of the survival functions, log transformed quantiles, restricted mean survival times, as well as an average hazard ratio, the Cox model score statistic (logrank statistic), and the Cox-model hazard ratio. Adjustments for multiple testing and simultaneous confidence intervals are calculated using a multivariate normal approximation to the set of selected parameters.

Authors:Robin Ristl [aut, cre], Nicolas Ballarini [ctb]

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nph.pdf |nph.html
nph/json (API)

# Install 'nph' in R:
install.packages('nph', repos = c('https://rmaster1.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • pembro - Reconstructed Data Set Based On Survival Curves In Burtess et al. 2019

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.89 score 2 packages 32 scripts 217 downloads 2 mentions 15 exports 36 dependencies

Last updated 3 years agofrom:e2fa54d4e7. Checks:OK: 6 NOTE: 1. Indexed: yes.

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Doc / VignettesOKNov 01 2024
R-4.5-winOKNov 01 2024
R-4.5-linuxOKNov 01 2024
R-4.4-winNOTENov 01 2024
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Exports:logrank.maxtestlogrank.testm2rnph_guinphparamspchazplot_diagramplot_shhrplot_subgroupspop_pchazrSurv_conditional_funrSurv_funsample_conditional_funsample_funsubpop_pchaz

Dependencies:clicodetoolscolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmuhazmultcompmunsellmvtnormnlmepillarpkgconfigR6RColorBrewerrlangsandwichscalessurvivalTH.datatibbleutf8vctrsviridisLitewithrzoo

| nph Examples: Delayed treatment effects, treatment switches and heterogeneous patient populations: how to design and analyse RCTs in oncology

Rendered fromexamples.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2020-01-10
Started: 2019-08-23

Introduction to nph and Usage Instructions

Rendered fromusage.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2020-01-10
Started: 2019-08-23